PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc040074.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 175aa    MW: 19389.4 Da    PI: 10.139
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc040074.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-192373155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++y+GVr ++ +gr++AeIrdp++   ++r++lg+f taeeAa a++ a+++++g
  Itr_sc040074.1_g00001.1 23 PRYRGVRKRP-WGRFAAEIRDPVK---KARVWLGTFNTAEEAAHAYDTAARAFHG 73
                             68********.**********654...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.68E-272380No hitNo description
PfamPF008477.6E-132373IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-312480IPR001471AP2/ERF domain
PROSITE profilePS5103223.1962481IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-222481IPR016177DNA-binding domain
SMARTSM003801.2E-332487IPR001471AP2/ERF domain
PRINTSPR003678.2E-112536IPR001471AP2/ERF domain
PRINTSPR003678.2E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MRHRKTPATP IQQPVANIAA DPPRYRGVRK RPWGRFAAEI RDPVKKARVW LGTFNTAEEA  60
AHAYDTAARA FHGPKAKTNF GFTDRRDNDN NNNHSHSIIP PVALPGENHF QRFPYSRPAS  120
SSLSSTVESS SGPRPPSDRN KQPPPPRPKV PVPPLPDDCH SDCDSSSSVV DDQDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-202080162ATERF1
3gcc_A8e-202080162ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501349.11e-39PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9FE674e-30ERF80_ARATH; Ethylene-responsive transcription factor 9
SwissprotO803394e-30ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A0V0HV083e-44A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGGLYMA02G43500.12e-33(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.18e-21ethylene response factor 7